| Data Category | Description | Organism | Source | PubMed | Link |
|---|---|---|---|---|---|
Genome Assembly |
Chromosome Assembly | Zea mays B73 | Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1); Nov 2020 | Hufford et al. - PubMed 34353948 | NCBI FTP |
Genes |
Maize Community Gene Set | Zea mays B73 | MaizeGDB/Gramene Zm00001e.1; Jan 2021 | MaizeGDB download | |
| NCBI Annotation | RefSeq Annotation Release 103; 1 Sep 2020 | O'Leary et al. - PubMed 26553804 | NCBI FTP | ||
Gene Expression |
Gene expression computed on official gene models for Zm-B73-REFERENCE-NAM 5.0 | Zea mays B73 | 24 Aug 2021 | Sekkon et al. - PubMed 23637782 | MaizeGDB Expression download |
Gene Ontology |
GO annotations | Zea mays | GOA at UniProt - release 2021_03; 16 Jun 2021 | Huntley et al. - PubMed 25378336 | GOA UniProt FTP |
Proteins |
Protein Annotations from UniProt | Zea mays | UniProt release 2021_03; 16 Jun 2021 | UniProt Consortium - PubMed 33237286 | UniProt FTP |
| Protein family and domain assignments to proteins from InterPro | InterPro v.86.0; 24 Jun 2021 | Blum et al. - PubMed 33156333 | InterPro FTP | ||
Pathways |
KEGG | Zea mays | KEGG release 100.0; 1 Oct 2021 | Kanehisa et al. - PubMed 34423492 | KEGG |
| Plant Reactome | Plant Reactome, version 77; 9 Jun 2021 | Naithani et al. - PubMed 31680153 | Plant Reactome Gramene download | ||
Homology |
Orthologue and paralogue relationships | Ananas comosus Asparagus officinalis Aegilops tauschii Arabidopsis thaliana Brachypodium distachyon Dioscorea cayenensis Eragrostis curvula Eragrostis tef Hordeum vulgare Leersia perrieri Musa acuminata Oryza barthii Oryza brachyantha Oryza glaberrima Oryza glumipatula Oryza longistaminata Oryza meridionalis Oryza nivara Oryza punctata Oryza rufipogon Oryza sativa Indica Group Oryza sativa Japonica Group Panicum hallii Panicum hallii var. hallii Sorghum bicolor Setaria italica Saccharum spontaneum Setaria viridis Triticum aestivum Triticum dicoccoides Triticum turgidum Triticum urartu Zea mays |
Ensembl Plant Biomart release 51; Apr 2021 | Howe et al. - PubMed 33137190 | Ensembl Plant Biomart download |
Variation |
Single Nucleotide Polymorphisms | Zea mays B73 | Ensembl Plants release 51; May 2021 | Yates et al. 2022 - Pubmed 34791415 | Ensembl Genomes |
Maize Community Datasets |
Grotewold CAGE Tag Count Root | Zea mays | 3 May 2021 | Mejía-Guerra et al. - PubMed 26628745 | Grotewold CAGE Tag Count Root download |
| Grotewold CAGE Tag Count Shoot | 3 May 2021 | Mejía-Guerra et al. - PubMed 26628745 | Grotewold CAGE Tag Count Shoot download | ||
| GWAS Atlas | 31 Mar 2021 | Tian et al. - PubMed 31566222 | GWAS Atlas download | ||
| MaizeGDB_UniformMu | 18 Mar 2021 | McCarty et al. - PubMed 24194867 | MaizeGDB_UniformMu download | ||
| Stam 2017 Husk H3K9ac Enhancer | 3 Apr 2020 | Oka et al. - PubMed 28732548 | Stam 2017 Husk H3K9ac Enhancer download | ||
| Stam 2017 Seedling H3K9ac Enhancer | 3 Apr 2020 | Oka et al. - PubMed 28732548 | Stam 2017 Seedling H3K9ac Enhancer download | ||
| Vollbrecht 2010 Ac/Ds Insertions | 3 Apr 2020 | Vollbrecht et al. - PubMed 20581308 | Vollbrecht 2010 Ac/Ds Insertions download | ||
| Wallace 2014 GWAS | 18 Mar 2021 | Wallace et al. - PubMed 25474422 | Wallace 2014 GWAS download | ||
Publications |
A mapping from genes to publications | Zea mays | Uniprot Publications, release 2021_03; 16 Jun 2021 | UniProt Consortium - PubMed 33237286 | UniProt FTP |
Ontologies |
Evidence Ontology | 4 Jun 2021 | Chibucos et al. - PubMed 25052702 | ECO | |
| Gene Ontology | 1 May 2021 | Gene Ontology Consortium - PubMed 27899567 | GO | ||
| Plant Ontology | 20 Aug 2020 | Walls et al. - PubMed 31214208 | PO | ||
| Sequence Ontology | 10 Jun 2021 | Eilbeck et al. - PubMed 15892872 | SO |
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